E-GEOD-49830 - Next Generation Metatranscriptome Sequencing of an Anaerobic Hexadecane-Degrading Microbial Consortia

Status
Released on 29 October 2013, last updated on 3 May 2014
Organism
mixed culture KAZ_0815
Samples (3)
Protocols (4)
Description
Purpose: Identification of transcriptionally active genes in the unculturable community constituent, Smithella, during hexadecane degradation; Differential gene expression analysis of hexadecane-relevant genes acoss three different conditions; Extension of metatranscriptomic datasets to other community constituents to identify interspecies relationships. mRNA profiles were generated for this community across three different conditions (hexadecane-, butyric acid-, caprylic acid-degrading conditions) using a modified version of Nextera and sequenced using Illumina's Miseq platform.
Experiment type
RNA-seq of coding RNA 
Contacts
Mallory Embree <mallory.embree@gmail.com>, Karsten Zengler, Mallory M Embree
Citation
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-GEOD-49830.idf.txt
Sample and data relationshipE-GEOD-49830.sdrf.txt
Additional data (1)E-GEOD-49830.additional.1.zip
Links