E-GEOD-48587 - Expression data from Pseudomonas aeruginosa PAO1 and an isogenic HCN negative mutant (PAO6344), grown under cyanogenic conditions.

Status
Released on 16 September 2013, last updated on 3 June 2014
Organism
Pseudomonas aeruginosa, Pseudomonas aeruginosa PAO1
Samples (4)
Array (1)
Protocols (7)
Description
Pseudomonas aeruginosa produces the toxic secondary metabolite hydrogen cyanide (HCN) at high cell population densities and low aeration. We have used Affimetrix microarrays to investigate the impact of HCN as a signal in cell-cell communication by comparing the transcriptome of the wild-type strain PAO1 to that of an HCN-negative mutant (PAO6344) under cyanogenic conditions. Total RNA was extracted from cultures of the wild-type strain PAO1 as well as from the isogenic HCN negative mutant (PAO6344), when HCN production was maximal (i.e. end of exponential growth phase). Each RNA pool derived from 3 technical replicates. 1 biological replicate per strain was performed on a different day.
Experiment type
transcription profiling by array 
Contacts
Emanuela Frangipani <emanuela.frangipani@uniroma3.it>, Dieter Haas, Gaëtan Cherbuin, Huw D Williams, Isabel Pérez-Martínez
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-GEOD-48587.idf.txt
Sample and data relationshipE-GEOD-48587.sdrf.txt
Raw data (1)E-GEOD-48587.raw.1.zip
Processed data (1)E-GEOD-48587.processed.1.zip
Array designA-AFFY-30.adf.txt
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