E-GEOD-4853 - Grass shrimp SAGE libraries

Status
Submitted on 15 May 2006, released on 18 May 2006, last updated on 4 May 2014
Organism
Palaemonetes pugio
Samples (4)
Protocols (2)
Description
Adult male grass shrimp were exposed for 96 hours to LC50 concentrations of either Fipronil, Endosulfan, or Cadmium, as well as a Carrier Control exposure. RNA was extracted from whole-body homogenates using the RNABee kit. Tags were clustered to identify tags diagnostic of the different exposures. Keywords: SAGE, Grass shrimp, ecotoxicogenomics 3 randomly selected shrimp were pooled for each library. Libraries were constructed using the I-SAGE long kit from Invitrogen.
Experiment type
transcription profiling by SAGE 
Contacts
Joe Griffitt <joe.griffitt@usm.edu>, George T Chandler, Joe M Quattro, Robert J Griffitt, Thomas Greig
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-GEOD-4853.idf.txt
Sample and data relationshipE-GEOD-4853.sdrf.txt
Processed data (1)E-GEOD-4853.processed.1.zip
Links