E-GEOD-48388 - Adult Murine Interstitial Cells of Cajal (ICC) and Small Intestine (Sm Int) Somatic piRNA-like RNA (pilRNA)

Status
Released on 15 July 2013, last updated on 5 September 2013
Organism
Mus musculus
Samples (2)
Protocols (2)
Description
This study annotates the NGS reads in ICC and Sm Int sncRNA libraries. In addition to known sncRNAs, we identified numerous somatic piRNA-like RNAs. This study confirms the expression of pilRNAs in somatic tissues and outlines their major characteristics. ICC and Sm Int were collected from adult mice (C57BL/6). Small RNA was isolated from samples and cDNA libraries were generated for 454 sequencing. Sequences from FastA files were aligned to known sncRNA and the mouse mm9 genome. This was followed by subsequent novel small RNA annotation.
Experiment type
RNA-seq of non coding RNA 
Contacts
Nicole Ortogero <geo@ncbi.nlm.nih.gov>, Bhupal Bhetwal, Dickson Luong, Grant Hennig, John McCarrey, Seungil Ro, Wei Yan
MINSEQE
Exp. designProtocolsFactorsProcessedSeq. reads
Files
Investigation descriptionE-GEOD-48388.idf.txt
Sample and data relationshipE-GEOD-48388.sdrf.txt
Processed data (1)E-GEOD-48388.processed.1.zip
Links