E-GEOD-48082 - Temperature-dependent alternative splicing of FLM controls flowering in Arabidopsis thaliana

Status
Released on 19 September 2013, last updated on 25 November 2013
Organism
Arabidopsis thaliana
Samples (14)
Protocols (3)
Description
How plants control the transition to flowering in response to ambient temperature is only beginning to be understood. In Arabidopsis thaliana, the MADS-box transcription factor genes FLOWERING LOCUS M (FLM) and SHORT VEGETATIVE PHASE (SVP) have key roles in this process. FLM is subject to temperature-dependent alternative splicing, producing two splice variants, FLM-β and FLM-δ, which compete for interaction with the floral repressor SVP. The SVP/FLM-β complex is predominately formed at low temperatures and prevents precocious flowering. In contrast, the competing SVP FLM-δ complex is impaired in DNA binding and acts as a dominant negative activator of flowering at higher temperatures. Our results demonstrate the importance of temperature-dependent alternative splicing in modulating the timing of the floral transition in response to environmental change. ChIP-seq A. thaliana FLM (3 replicates for gFLM and 2 replicates for FLM splice variants)
Experiment type
ChIP-seq 
Contacts
Felix Ott <geo@ncbi.nlm.nih.gov>, David Posé, Gerco C Angenent, Johannes Mathieu, Leonie Verhage, Levi Yant, Markus Schmid, Richard G Immink
Citation
Temperature-dependent regulation of flowering by antagonistic FLM variants. Pos� D, Verhage L, Ott F, Yant L, Mathieu J, Angenent GC, Immink RG, Schmid M. , Europe PMC 24067612
MINSEQE
Exp. designProtocolsFactorsProcessedSeq. reads
Files
Investigation descriptionE-GEOD-48082.idf.txt
Sample and data relationshipE-GEOD-48082.sdrf.txt
Links