E-GEOD-48040 - A global profiling of gene expression under cold stress in Brachypodium

Status
Released on 15 July 2013, last updated on 5 September 2013
Organism
Brachypodium distachyon
Samples (2)
Protocols (4)
Description
RNA-Seq was performed to study the change of gene expression before and after cold treatment in Brachypodium. Different change patterns were identified. We have provided a complete view of transcriptome under cold stress condition, which will deepen our understanding of gene expression regulation in cold stress response as well as cold stress response mechanism for monocot plants. The mRNA profiles of 12-day-old Brachypodium seedlings with and without cold treatment (4 °C for 24 h) were generated by deep sequencing using Illumina HiSeq™ 2000.
Experiment type
RNA-seq of coding RNA 
Contacts
MINSEQE
Exp. designProtocolsFactorsProcessedSeq. reads
Files
Investigation descriptionE-GEOD-48040.idf.txt
Sample and data relationshipE-GEOD-48040.sdrf.txt
Processed data (1)E-GEOD-48040.processed.1.zip
Links