E-GEOD-47195 - SALT-RESPONSIVE ERF1 expression profiling in rice roots

Status
Released on 17 September 2013, last updated on 13 May 2015
Organism
Oryza sativa
Samples (6)
Array (1)
Protocols (7)
Description
To identify genes that are regulated by SERF1, we performed expression profiling on roots of serf1 and wild-type plants under standard growth conditions. Plants were grown for 4 weeks at (day/night) 26/22°C, 75/70% relative humidity with a day-length of 12 h and a light intensity of 700 µmol m-2 s-1. Seeds of serf1 T-DNA lines and Nipponbare wild type were placed on hydroponic boxes with full-strength Yoshida medium (Yoshida et al., 1971) using styrofoam adaptors. For each genotype 3 biological replicates were separately isolated and measured.
Experiment type
transcription profiling by array 
Contacts
Jos Schippers <schippers@mpimp-golm.mpg.de>, Bernd Mueller-Roeber, Jos H Schippers, Romy Schmidt
Citation
SALT-RESPONSIVE ERF1 is a negative regulator of grain filling and gibberellin-mediated seedling establishment in rice. Schmidt R, Schippers JH, Mieulet D, Watanabe M, Hoefgen R, Guiderdoni E, Mueller-Roeber B.
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-47195.idf.txt
Sample and data relationshipE-GEOD-47195.sdrf.txt
Raw data (1)E-GEOD-47195.raw.1.zip
Processed data (1)E-GEOD-47195.processed.1.zip
Array designA-AFFY-126.adf.txt
Links