E-GEOD-46507 - Comparison of the nucleotide-resolution, genome-wide, 5'-end maps of the transcriptomes of Escherichia coli K12 strain BW25113 and Streptomyces coelicolor A3(2) strain M145

Status
Released on 1 May 2013, last updated on 22 May 2013
Organism
Escherichia coli BW25113, Streptomyces coelicolor A3(2)
Samples (4)
Protocols (4)
Description
The differential RNA-seq data contained within this entry is complemented by global RNA-seq. S. coelicolor and E. coli reference strains were grown in batch culture with shaking. The E. coli sample was extracted during mid-exponential growth, while the S. coelicolor sample was extracted at the start of pigmented antibiotic production. Each of the two samples was incubated with or without TAP (tobacco acid pyrophosphatase) before library construction. Thus, 4 libraries were analysed. TAP treatment allows the cloning and sequencing of 5' ends that were originally triphosphorylated.
Experiment type
RNA-seq of coding RNA 
Contacts
David Romero A. <efy4dr@leeds.ac.uk>, David A Romero, Kenneth J McDowall, Yu-fei Lin
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-GEOD-46507.idf.txt
Sample and data relationshipE-GEOD-46507.sdrf.txt
Processed data (1)E-GEOD-46507.processed.1.zip
Links