E-GEOD-46413 - ArcA Chip-chip from Escherichia coli MG1655 K-12, WT and ∆arcA strains

Status
Released on 17 October 2013, last updated on 3 June 2014
Organism
Escherichia coli str. K-12 substr. MG1655
Samples (10)
Array (1)
Protocols (10)
Description
Mapping the occupancy of ArcA throughout the genome of Escherchia coli MG1655 K-12 using an affinity purified antibody under anaerobic and aerobic growth conditions. As a control, we also performed ChIP-chip onArcA in a ∆arcA mutant strain of Escherchia coli MG1655 K-12. Described in the manuscript The response regulator ArcA uses a diverse binding site architechture to globally regulate carbon oxidation in E. coli Mapping of occupancy of ArcA in the genome of Escherchia coli MG1655 K-12 during anaerobic fermentation and aerobic respiration. Immunoprecipitated DNA compared to INPUT for each sample.
Experiment type
ChIP-chip by tiling array 
Contacts
Aseem Ansari, Dan Park, Patricia Kiley, Robert Landick, Sohail Acktar
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-GEOD-46413.idf.txt
Sample and data relationshipE-GEOD-46413.sdrf.txt
Raw data (2)E-GEOD-46413.raw.1.zip, E-GEOD-46413.raw.2.zip
Processed data (1)E-GEOD-46413.processed.1.zip
Array designA-GEOD-8708.adf.txt
Links