E-GEOD-46412 - Expression analysis of Escherichia coli MG1655 K-12 WT and ∆arcA mutant

Status
Released on 17 October 2013, last updated on 2 May 2014
Organism
Escherichia coli str. K-12 substr. MG1655
Samples (6)
Array (1)
Protocols (7)
Description
Investigation of whole genome gene expression level changes in a Escherichia coli MG1655 K-12 ∆arcA mutant, compared to the wild-type strain. The mutations engineered into this strain produce a strain lacking the ArcA protein. The results are further described in the manuscript The response regulator ArcA uses a diverse binding site architechture to globally regulate carbon oxidation in E. coli A six chip study using total RNA recovered from three separate cultures of Escherichia coli MG1655 K-12 WT and three separate cultures of the ∆arcA mutant strain. Each chip measures the expression level of 4,661 genes from Escherichia coli MG1655 K-12 with eight 60-mer probes per gene, with each probe represented twice on the array.
Experiment type
transcription profiling by array 
Contacts
Dan Park <danmpark85@gmail.com>, Aseem Ansari, Patricia Kiley, Robert Landick, Sohail Acktar
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-GEOD-46412.idf.txt
Sample and data relationshipE-GEOD-46412.sdrf.txt
Raw data (1)E-GEOD-46412.raw.1.zip
Processed data (1)E-GEOD-46412.processed.1.zip
Array designA-GEOD-14649.adf.txt
Links