E-GEOD-45459 - DNA Methylation data from early human B-cell development

Status
Released on 26 March 2013, last updated on 31 March 2013
Organism
Homo sapiens
Samples (22)
Array (1)
Protocols (6)
Description
A global DNA methylation and gene expression analysis of early human B-cell development reveals a demethylation signature and transcription factor network. Nucleic Acids Res. 2012 Dec;40(22):11339-51. We examined DNA methylation and RNA expression status during early B-cell development by sorting multiple replicates of four separate stages of pre-B cells derived from normal human fetal bone marrow and applied high-dimension DNA methylation scanning and expression arrays. We identified a distinct development-dependent demethylation signature which has gene expression regulatory properties for pre-B cells, and provide a catalog reference for the epigenetic changes that occur in pre-B-cell leukemia and other B-cell-related diseases. Human fetal bone marrow was obtained, and using flow cytometry antibodies, four populations of B-cell developmental stages including stage 1 (S1; predominantly multipotent progenitors before lineage commitment and common lymphoid progenitors), stage II (S2; pre-B-I cells), stage 3 (S3; pre-B-II cells) and stage 4 cells (S4; immature B cells). For 8 indibiduals, DNAs and RNAs were isolated and the methylation and expression changes during early B-cell development were identified using the Illumina HumanMethylation450 Beadchip (Illumina) and GeneChip Human Gene 1.0 ST Array (Affymetrix).
Experiment type
methylation profiling by array 
Contacts
Seung-Tae Lee <essere2@naver.com>, Joseph L Wiemels, Yuanyuan Xiao
Citation
A global DNA methylation and gene expression analysis of early human B-cell development reveals a demethylation signature and transcription factor network. Lee ST, Xiao Y, Muench MO, Xiao J, Fomin ME, Wiencke JK, Zheng S, Dou X, de Smith A, Chokkalingam A, Buffler P, Ma X, Wiemels JL. , Europe PMC 23074194
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-GEOD-45459.idf.txt
Sample and data relationshipE-GEOD-45459.sdrf.txt
Processed data (1)E-GEOD-45459.processed.1.zip
Array designA-GEOD-13534.adf.txt
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