E-GEOD-45220 - Expression data from HT-29, a human colonic epithelial cell line

Status
Released on 16 March 2013, last updated on 24 March 2013
Organism
Homo sapiens
Samples (9)
Array (1)
Protocols (8)
Description
Gene(s) in epithelial cells can be upregulated or downregulated by different stimuli in a tissue-specific manner. We used genome-wide microarray analysis to profile the expression of genes in HT-29 cells that are upregulated after stimulation with sodium butyrate (NaB) and subsequently downregulated by the addition of ciprofloxacin antibiotic. The specific aim was to evaluate genes that are associated with mucosal immunity. HT-29 cells were stimulated with sodium butyrate (NaB) (n=3), NaB and ciprofloxacin (n=3) or culture media (unstimulated control, n=3) for 24 hours. RNA extracted from these cells were hybridized on Affymetrix microarrays.
Experiment type
transcription profiling by array 
Contact
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-GEOD-45220.idf.txt
Sample and data relationshipE-GEOD-45220.sdrf.txt
Raw data (1)E-GEOD-45220.raw.1.zip
Processed data (1)E-GEOD-45220.processed.1.zip
Array designA-GEOD-11532.adf.txt
Links