E-GEOD-45176 - RNA-seq expression analysis to determine expression profile similarities between fibroblasts, induced endothelial cells from fibroblasts, and human dermal microvascular endothelial cells

Status
Released on 14 April 2013, last updated on 25 April 2013
Organism
Homo sapiens
Samples (4)
Protocols (5)
Description
The goal of this study was to determine the similarity between human dermal microvascular endothelial cells, induced endothelial cells from fibroblasts, and fibroblasts through RNA-seq expression analysis. RNA samples from independently induced cultures, plus fibroblast and human dermal microvascular endothelial cultures were converted into individual cDNA libraries using Illumina TruSeq methods and subjected to single-end 50 base-sequence analysis at 20-30 million read depths. Examination of one fibroblast culture, one human dermal mibrovascular endothelial cell culture, and two induced endothelial cell cultures.
Experiment type
RNA-seq of coding RNA 
Contacts
Bruce Aronow, John Cooke, Rebekah Karns
MINSEQE
Exp. designProtocolsFactorsProcessedSeq. reads
Files
Investigation descriptionE-GEOD-45176.idf.txt
Sample and data relationshipE-GEOD-45176.sdrf.txt
Processed data (1)E-GEOD-45176.processed.1.zip
Links