E-GEOD-45033 - Effect of CCAR1 depletion on androgen-dependent gene expression in LNCaP cells

Status
Released on 1 October 2013, last updated on 7 October 2013
Organism
Homo sapiens
Samples (8)
Array (1)
Protocols (7)
Description
Androgen receptor (AR) plays a critical role in prostate cancer onset and progression, and cell cycle and apoptosis regulator 1 (CCAR1) functions as an AR co-activator. We performed genome-wide gene expression analysis in control (shNS) and CCAR1-depleted (shCCAR1) LNCaP cells to assess the global effect of CCAR1 on the expression of androgen responsive genes. LNCaP cells expressing shNS or shCCAR1 were treated with ethanol or 10 nM DHT for 24 hr, and total RNA was isolated using the RNeasy mini kit (Qiagen). The integrity of RNA was analyzed using an Agilent 2100 Bioanalyzer. Two independent biological replicates were assayed for each sample. The microarrays were performed following the Affymetrix standard protocol.
Experiment type
transcription profiling by array 
Contacts
Jeong Hoon Kim <geo@ncbi.nlm.nih.gov>, Jeong H Kim, Woo-Young Seo
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-GEOD-45033.idf.txt
Sample and data relationshipE-GEOD-45033.sdrf.txt
Raw data (1)E-GEOD-45033.raw.1.zip
Processed data (1)E-GEOD-45033.processed.1.zip
Array designA-AFFY-141.adf.txt
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