E-GEOD-45029 - Doxycycline alters metabolism and proliferation of human cell lines

Status
Released on 22 April 2013, last updated on 2 June 2014
Organism
Homo sapiens
Samples (6)
Array (1)
Protocols (7)
Description
The tetracycline antibiotics are widely used in biomedical research as mediators of inducible gene expression systems. Despite many known effects of tetracyclines on mammalian cells -- including inhibition of the mitochondrial ribosome -- there have been few reports on potential off-target effects at concentrations commonly used in inducible systems. Here, we report that in human cell lines, commonly used concentrations of doxycycline change gene expression patterns and concomitantly shift metabolism towards a more glycolytic phenotype, evidenced by increased lactate secretion and reduced oxygen consumption. We also show that these concentrations are sufficient to slow proliferation and alter cell cycle progression in vitro. These findings suggest that researchers using doxycycline in inducible expression systems should design appropriate controls to account for potential confounding effects of the drug on cellular metabolism. Total RNA was extracted from MCF12A cells treated with either vehicle control or Dox at 1 ug/mL. The experiment was performed in biological triplicate. Microarray results were processed using the RMA method.
Experiment type
transcription profiling by array 
Contacts
William Sullivan <wsullivan@mednet.ucla.edu>, Ashley Cass, Autumn G York, Daniel Braas, Ethan Ahler, Heather R Christofk, Steven J Bensinger, Thomas G Graeber, William J Sullivan
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-GEOD-45029.idf.txt
Sample and data relationshipE-GEOD-45029.sdrf.txt
Raw data (1)E-GEOD-45029.raw.1.zip
Processed data (1)E-GEOD-45029.processed.1.zip
Array designA-AFFY-44.adf.txt
Links