E-GEOD-44601 - Expression data from SND1 knockdown clones of human HCC cell line QGY-7703

Status
Released on 1 April 2013, last updated on 2 June 2014
Organism
Homo sapiens
Samples (9)
Array (1)
Protocols (8)
Description
Staphylococcal nuclease domain-containing protein 1 (SND1) is overexpressed in human hepatocellular carcinoma (HCC) and positively regulates development and progression of HCC. We established stable clones expressing SND1 shRNA in QGY-7703 cells and analyzed the gene expression profiles of a control clone and two SND1 knockdown clones to check what genes are regulated by SND1. Steady-state proliferating cells were collected for RNA extraction and Affymetrix microarray hybridization. Three biological replicates each of a control clone and 2 SND1 knockdown clones.
Experiment type
transcription profiling by array 
Contacts
Devanand Sarkar, Myrna Serrano
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-44601.idf.txt
Sample and data relationshipE-GEOD-44601.sdrf.txt
Raw data (1)E-GEOD-44601.raw.1.zip
Processed data (1)E-GEOD-44601.processed.1.zip
Array designA-AFFY-37.adf.txt
Links