E-GEOD-44442 - Genomic binding profile of TAL1 in human Endothelial Colony-Forming Cells

Status
Released on 6 May 2014, last updated on 31 May 2014
Organism
Homo sapiens
Samples (2)
Protocols (3)
Description
Endothelial colony-forming cells (ECFCs) have been reported as promising cells for regenerative medicine thanks to their angiorepair properties. Transcription factors are primary determinants of the functional capacity of the cells and TAL1 has been shown as a critical regulator of endothelial lineage in both development and adult life. However, only few (three) TAL1 targets have been identified so far in mouse and human endothelial cells. This ChIP-seq experiment was designed to identify genome binding/occupancy of TAL1 by ChIP and high throughput sequencing in primary human endothelial stem/progenitor cells. TAL1 ChIP and IgG ChIP (negative control) were performed in crosslinked ECFCs derived from human umbilical cord blood.
Experiment type
ChIP-seq 
Contacts
Alphonse Chu <alchu@ohri.ca>, Carmen G Palii, Carolina Perez-Iratxeta, Erinija Pranckeviciene, Marjorie Brand
Citation
Trichostatin A Enhances Vascular Repair by Injected Human Endothelial Progenitors through Increasing the Expression of TAL1-Dependent Genes. Palii CG, Vulesevic B, Fraineau S, Pranckeviciene E, Griffith AJ, Chu A, Faralli H, Li Y, McNeill B, Sun J, Perkins TJ, Dilworth FJ, Perez-Iratxeta C, Suuronen EJ, Allan DS, Brand M. , Europe PMC 24792117
MINSEQE
Exp. designProtocolsFactorsProcessedSeq. reads
Files
Investigation descriptionE-GEOD-44442.idf.txt
Sample and data relationshipE-GEOD-44442.sdrf.txt
Processed data (1)E-GEOD-44442.processed.1.zip
Links