E-GEOD-44019 - Affymetrix SNP array data for metastatic melanoma specimens

Status
Released on 19 September 2013, last updated on 4 May 2014
Organism
Homo sapiens
Samples (16)
Array (1)
Protocols (7)
Description
Comparison between the copy number of differentially methylated sites between lymph node metastasis from melanoma patients with good prognosis and melanoma brain metastasis. All samples are taken from different patients, and were established as cell lines in the John Wayne Cancer Institute. Sixteen metastatic melanomas were run on Affymetrix Genome-Wide Human SNP Array 6.0. Lymph node metastases and brain metastases genetic copy number variations were compared.
Experiment types
genotyping by array, comparative genomic hybridization by array 
Contacts
Citation
Epigenome-wide DNA methylation landscape of melanoma progression to brain metastasis reveals aberrations on homeobox D cluster associated with prognosis. Marzese DM, Scolyer RA, Huynh JL, Huang SK, Hirose H, Chong KK, Kiyohara E, Wang J, Kawas NP, Donovan NC, Hata K, Wilmott JS, Murali R, Buckland ME, Shivalingam B, Thompson JF, Morton DL, Kelly DF, Hoon DS. , Europe PMC 24014427
MIAME
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