E-GEOD-43993 - Transcript profiling of Arabidopsis epiF3 plants

Status
Released on 1 December 2013, last updated on 2 June 2014
Organism
Arabidopsis thaliana
Samples (6)
Array (1)
Protocols (6)
Description
Arabidopsis msh1 mutants display developmental reprogramming (dr) phenotypes, include reduction in growth, enhanced branching, and delayed maturation and flowering time. MSH1-epi lines were derived by crossing msh1 lines with Col-0 wild type, followed by selection for homozygous MSH1/MSH1 F2 plants and serial self-pollination. MSH1-epiF3 plants displayed phenotypic variation in plant growth, showing enhanced growth, larger rosette diameter, thicker floral stems and earlier flowering time. We carried bisulfite sequencing and uncover the methylome changes accompany the heritable MSH1-epi phenotypes that condition dramatic variation in plant growth. Arabidopsis Col-0 wild type and epiF3 plant tissues were collected for RNA extration and hybridization on Affymetrix.
Experiment type
transcription profiling by array 
Contacts
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-43993.idf.txt
Sample and data relationshipE-GEOD-43993.sdrf.txt
Raw data (1)E-GEOD-43993.raw.1.zip
Processed data (1)E-GEOD-43993.processed.1.zip
Array designA-AFFY-2.adf.txt
Links