E-GEOD-43893 - RNA sequencing of SHP -/- knockout mouse transcriptome

Status
Released on 22 October 2013, last updated on 25 November 2013
Organism
Mus musculus
Samples (6)
Protocols (2)
Description
Goal of this study is to identify annotated and non-annotated genes transcriptionally regulated by small heterodime partner (SHP, Nrob2) expression. Liver 5' capped RNA samples from three SHP -/- and three wild type mice were sequenced with Illumina GAII sequencer.
Experiment type
RNA-seq of coding RNA 
Contacts
Don Delker <don.delker@hsc.utah.edu>, Curt Hagedorn, Li Wang
Citation
Genome-wide transcriptome analysis identifies novel gene signatures implicated in human chronic liver disease. Smalling RL, Delker DA, Zhang Y, Nieto N, McGuiness MS, Liu S, Friedman SL, Hagedorn CH, Wang L. , Europe PMC 23812039
MINSEQE
Exp. designProtocolsFactorsProcessedSeq. reads
Files
Investigation descriptionE-GEOD-43893.idf.txt
Sample and data relationshipE-GEOD-43893.sdrf.txt
Links