E-GEOD-42426 - Targeting the treponemal microbiome of digital dermatitis infections by deep coverage pyrosequencing

Status
Released on 25 June 2013, last updated on 3 May 2014
Organism
Bos taurus
Samples (36)
Protocols (2)
Description
We examined 36 biopsies taken from digital dermatitis lesions of Holstein cows. The target was the V3 -V4 variable region of 16S rRNA using Treponema specific primers. We identified 20 different taxa of Treponema using this approach. Phylogenetic study of the Treponema taxa found in digital dermatitis lesions of Holstein cows.
Experiment type
DNA-seq 
Contacts
Antoni F Bretó, Kirstine Klitgaard, Mette Boye, Tim K Jensen
Citation
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-GEOD-42426.idf.txt
Sample and data relationshipE-GEOD-42426.sdrf.txt
Processed data (1)E-GEOD-42426.processed.1.zip
Links