E-GEOD-42308 - COHCAP HCT116 Mutant Comparison [methylation]

Status
Released on 8 June 2013, last updated on 17 June 2013
Organism
Homo sapiens
Samples (6)
Array (1)
Protocols (6)
Description
Genome-wide expression and methylation differences are compared for a normal HCT116 cell line and a derived mutant with altered DNA methylation patterns. The data compares the effect of a gene mutation on genome-wide expression (and methylation). This data is being published as a technical test of utility for a novel integrative genomic algorithm (COHCAP) Keywords: parental, mutant
Experiment type
methylation profiling by array 
Contacts
Charles Warden, Heehyoung Lee, Hua Yu, Richard Jove
Citation
COHCAP: an integrative genomic pipeline for single-nucleotide resolution DNA methylation analysis. Warden CD, Lee H, Tompkins JD, Li X, Wang C, Riggs AD, Yu H, Jove R, Yuan YC. , Europe PMC 23598999
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-GEOD-42308.idf.txt
Sample and data relationshipE-GEOD-42308.sdrf.txt
Processed data (1)E-GEOD-42308.processed.1.zip
Array designA-GEOD-13534.adf.txt
Links