E-GEOD-41970 - Integrated microRNA and mRNA Signatures Associated with Survival in Triple Negative Breast Cancer

Status
Released on 19 April 2013, last updated on 29 April 2013
Organism
Homo sapiens
Samples (329)
Arrays (2)
Protocols (6)
Description
Triple negative breast cancer (TNBC) includes basal and non-basal subclasses. To further stratify TNBC we determined microRNA (miRNA) and mRNA expression profiles, linked specific miRNA signatures to patient survival and used miRNA/mRNA anti-correlations to identify TNBC subclasses associated with expression of canonical signal pathways RNA was isolated from formalin-fixed paraffin-embedded tissue cores of 165 primary tumors, 59 adjacent normal and 54 lymph node metastatic samples and expression of 664 miRNAs and 230 cancer-associated mRNAs was assessed for each sample using the nanoString nCounter platform. Kaplan-Meier distant-disease free and overall survival curves were compared using the log-rank test. Cox proportional hazard regression and risk score analysis were used to identify miRNAs for classification of patients with significantly different prognoses.
Experiment type
transcription profiling by array 
Contacts
Citation
Integrated microRNA and mRNA signatures associated with survival in triple negative breast cancer. Cascione L, Gasparini P, Lovat F, Carasi S, Pulvirenti A, Ferro A, Alder H, He G, Vecchione A, Croce CM, Shapiro CL, Huebner K. , Europe PMC 23405235
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-GEOD-41970.idf.txt
Sample and data relationshipE-GEOD-41970.sdrf.txt
Processed data (1)E-GEOD-41970.processed.1.zip
Array designsA-GEOD-16231.adf.txt, A-GEOD-16299.adf.txt
Links