E-GEOD-41261 - Exploring the larval transcriptome of the common sole (Solea solea L.)

Status
Released on 20 September 2013, last updated on 2 June 2014
Organism
Solea solea
Samples (31)
Array (1)
Protocols (5)
Description
A microarray platform for Solea solea was developed to study gene expression profiles of common sole developmental stages. Characterization of the transcriptome of S. solea, focusing on larval and juvenile stages. After transcriptome sequencing and annotation [TSA accession number GAAQ00000000], an oligo-DNA microarray for the detection of 12,836 unique transcripts was developed and applied to the study of gene expression profiles during larval-to-juvenile transition. For microarray experiments, pooled samples of 10–5 individuals (depending on larval age) were sampled and RNA extracted at 1, 4, 6, 11, 13, 18, 24 and 33 days post-hatching (dph). The number of biological replicates was four for each sampling point.
Experiment type
transcription profiling by array 
Contacts
Luca Bargelloni, Serena Ferraresso
Citation
Exploring the larval transcriptome of the common sole (Solea solea L.). Ferraresso S, Bonaldo A, Parma L, Cinotti S, Massi P, Bargelloni L, Gatta PP. , Europe PMC 23663263
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-GEOD-41261.idf.txt
Sample and data relationshipE-GEOD-41261.sdrf.txt
Raw data (1)E-GEOD-41261.raw.1.zip
Processed data (1)E-GEOD-41261.processed.1.zip
Array designA-GEOD-16124.adf.txt
Links