E-GEOD-41212 - Arabidopsis thaliana seed germination timecourse

Status
Released on 16 July 2013, last updated on 24 July 2013
Organism
Arabidopsis thaliana
Samples (116)
Array (1)
Protocols (7)
Description
This series analyses germinating Arabidopsis seeds with both temporal and spatial detail, revealing two transcriptional phases that are separated with respect to testa rupture. Performed as part of the ERA-NET Plant Genomics grant vSEED. Arabidopsis seeds were dissected into four tissues at nine time-points during seed germination. The tissues were the combined micropylar and chalazal endosperm (MCE), the remaining endosperm (PE), the radicle and embryonic axis (RAD) and the cotyledons (COT). At testa and endosperm rupture the seeds were sampled in separate pre- and post-ruptured populations.
Experiment type
transcription profiling by array 
Contacts
Simon Peter Pearce <simon.pearce@nottingham.ac.uk>, Alex Marshall, Andrew T Wood, Bas J Dekkers, George W Bassel, Gerhard Leubner-Metzger, James Gilbert, John R King, Kerstin Müller, Leonie Bentsink, Marieke van Bolderen-Veldkamp, Michael J Holdsworth, Natalio Krasnogor, Paweł Widera, Simon P Pearce
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-GEOD-41212.idf.txt
Sample and data relationshipE-GEOD-41212.sdrf.txt
Raw data (2)E-GEOD-41212.raw.1.zip, E-GEOD-41212.raw.2.zip
Processed data (1)E-GEOD-41212.processed.1.zip
Array designA-GEOD-16112.adf.txt
Links