E-GEOD-41177 - Region-specific gene expression profiles in left atria of patients with valvular atrial fibrillation

Status
Released on 18 September 2013, last updated on 2 June 2014
Organism
Homo sapiens
Samples (38)
Array (1)
Protocols (5)
Description
Of 54,675 expressed sequence tags, microarray analysis revealed that 391 genes were differently expressed (>1.5-fold difference) between LA-PV junction and LAA, including genes related to arrhythmia, cell death, fibrosis, hypertrophy, and inflammation. Microarray and q-PCR produced parallel results in analyzing the expression of particular genes. The expression of paired like homeodomain-2 (PITX2) and its target protein (short stature homeobox-2 [SHOX2]) was greater in LA-PV junction than in LAA, which may contribute to arrhythmogenesis. Five genes related to thrombogenesis were up-regulated in LAA, which may implicate for the preferential thrombus formation in LAA. Genes related to fibrosis were highly expressed in LAA, which was reflected by intense ultrastructural changes in this region Paired LA-PV junction and left atrial appendage (LAA) specimens were obtained from 16 patients with persistent AF receiving valvular surgery. The Paired specimens were sent for microarray comparison. Selected results were validated by quantitative real time-PCR (q-PCR) and Western blotting. Ultrastructural changes in the atria were evaluated by immunohistochemistry.
Experiment type
transcription profiling by array 
Contacts
Chi-Tai Kou, Feng-Chun Tsai, Stanley Nattel, Wei-Jan Chen, Yen-Chen Lin, Yi-Hsin Chan, Yuan-Min Lin, Yun-Shien Lee, Yung-Hsin Yeh
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-GEOD-41177.idf.txt
Sample and data relationshipE-GEOD-41177.sdrf.txt
Raw data (1)E-GEOD-41177.raw.1.zip
Processed data (1)E-GEOD-41177.processed.1.zip
Array designA-AFFY-44.adf.txt
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