E-GEOD-40885 - Data expression in alveolar macrophages induced by lipopolysaccharide in humans

Status
Released on 15 September 2012, last updated on 24 September 2012
Organism
Homo sapiens
Samples (14)
Array (1)
Protocols (7)
Description
Rationale: Lipopolysaccharide (LPS) is ubiquitous in the environment. Inhalation of LPS has been implicated in the pathogenesis and/or severity of several lung diseases, including pneumonia, chronic obstructive pulmonary disease and asthma. Alveolar macrophages are the main resident leukocytes exposed to inhaled antigens. Objectives: To obtain insight into which innate immune pathways become activated within human alveolar macrophages upon exposure to LPS in vivo. In seven healthy humans sterile saline was instilled into a lung segment by bronchoscope, followed by instillation of LPS into the contralateral lung. Six hours later a bilateral bronchoalveolar lavage was performed and whole-genome transcriptional profiling was done (Affymetrix HG-U133 Plus 2.0) on purified alveolar macrophages, comparing cells exposed to saline or LPS from the same individuals.
Experiment type
transcription profiling by array 
Contacts
Frederic Reynier <frederic.reynier@biomerieux.com>, Alex F de Vos, Alexandre Pachot, Bruno Mougin, Jacobien J Hoogerwerf, Jaring S van der Zee, Malick Paye, Paul Bresser, Tom van der Poll
Citation
Gene expression profiles in alveolar macrophages induced by lipopolysaccharide in humans. Reynier F, De Vos AF, Hoogerwerf JJ, Bresser P, Van Der Zee JS, Paye M, Pachot A, Mougin B, Van Der Poll T. , Europe PMC 22952057
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-GEOD-40885.idf.txt
Sample and data relationshipE-GEOD-40885.sdrf.txt
Raw data (1)E-GEOD-40885.raw.1.zip
Processed data (1)E-GEOD-40885.processed.1.zip
Array designA-AFFY-44.adf.txt
R ExpressionSetE-GEOD-40885.eSet.r
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