E-GEOD-40857 - Expression data from mouse optic nerve head after optic nerve crush

Status
Released on 15 July 2013, last updated on 2 June 2014
Organism
Mus musculus
Samples (55)
Array (1)
Protocols (8)
Description
Reactive gliosis is a complex process that involves profound changes in gene expression. We used microarray to indentify differentially expressed genes and to investigate the molecular mechanisms of reactive gliosis in optic nerve head in response to optic nerve crush injury. C57Bl/6 female mice were 6-8 weeks old at the time of optic nerve crush surgery. The optic nerve in the left eye was crush 1 mm behind the globe for 10 seconds and the right eye served as contralateral control. The animals were allowed to recover for 1 day, 3 day, 1 week, 3 weeks and 3 months before the optic nerve heads were collected. The naive control mice did not receive any surgery in either eye. Due to the small tissue size of the mouse optic nerve head, two optic nerve heads were pooled together for each microarray chip. The left eyes and the right eyes of two mice were combined respectively to form one pair of experiment and control samples. There were five biological replicates (10 mice) for each condition.
Experiment type
transcription profiling by array 
Contacts
Citation
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-GEOD-40857.idf.txt
Sample and data relationshipE-GEOD-40857.sdrf.txt
Raw data (1)E-GEOD-40857.raw.1.zip
Processed data (1)E-GEOD-40857.processed.1.zip
Array designA-AFFY-36.adf.txt
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