E-GEOD-39973 - Structural, functional and molecular analysis of the effects of aging in the small intestine and colon of C57BL/6J mice [Colon data]

Status
Released on 3 September 2012, last updated on 26 September 2012
Organism
Mus musculus
Samples (4)
Array (1)
Protocols (8)
Description
By regulating digestion and absorption of nutrients and providing a barrier against the external environment the intestine provides a crucial contribution to the maintenance of health. To what extent aging-related changes in the intestinal system contribute to the impaired health of the aging body is still under debate. Young (4 months) and old (21 months) male C57BL/6J mice were fed a control low-fat (10E%) or a high-fat diet (45E%) for 2 weeks. During the intervention gross energy intake and energy excretion in the feces were measured. After sacrifice the small and large intestine were isolated whereby the small intestine was divided in three equal parts. Of each of the isolated segments Swiss rolls were prepared for histological analysis and the luminal content was isolated to examine alterations in the microflora with 16S rRNA Q-PCR. Furthermore, mucosal scrapings were isolated from each segment to determine differential gene expression by microarray analysis and global DNA methylation by pyrosequencing. Digestible energy intake was similar between the two age groups on both the control and the high-fat diet implying that macronutrient metabolism is not affected in 21-month-old mice. This observation was supported by the fact that the microarray analysis on RNA from intestinal scrapings showed no marked changes in expression of genes involved in metabolic processes. Decreased expression of Cubilin was observed in the intestine of 21-month-old mice, which might contribute to aging-induced vitamin B12 deficiency. Furthermore, microarray data analysis revealed enhanced expression of a high number of genes involved in immune response and inflammation in the colon, but not in the small intestine of the 21-month-old mice. Aging-induced global hypomethylation was observed in the colon and the distal part of the small intestine, but not in the first two sections of the small intestine. In 21-month old mice the most pronounced effects of aging was observed in the colon, limited changes were observed in the small intestine. Young (4M) and old (21M) wild type C57BL/6J mice were fed a low-fat diet or high-fat diet for 2 weeks. After the diet intervention period, the animals were killed and scrapings were made of the colon. Total RNA was isolated and subjected to gene expression profiling.
Experiment type
transcription profiling by array 
Contacts
Guido Hooiveld <guido.hooiveld@wur.nl>, Mark Boekschoten, Nicole de Wit, Noortje IJssennagger, Shohreh Keshtkar, Wilma Steegenga
Citation
Structural, functional and molecular analysis of the effects of aging in the small intestine and colon of C57BL/6 J mice. Steegenga WT, de Wit NJ, Boekschoten MV, Ijssennagger N, Lute C, Keshtkar S, Grootte Bromhaar MM, Kampman E, de Groot LC, M�ller M. , Europe PMC 22929163
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-39973.idf.txt
Sample and data relationshipE-GEOD-39973.sdrf.txt
Raw data (1)E-GEOD-39973.raw.1.zip
Processed data (1)E-GEOD-39973.processed.1.zip
Array designA-AFFY-130.adf.txt
R ExpressionSetE-GEOD-39973.eSet.r
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