E-GEOD-39924 - Expression data from Shox2 knockout and wildtype right atria of E11.5 mouse hearts

Status
Released on 3 June 2013, last updated on 17 June 2013
Organism
Mus musculus
Samples (2)
Array (1)
Protocols (5)
Description
The heart’s rhythm is initiated and regulated by a group of specialized cells in the sinoatrial node (SAN), the primary pacemaker of the heart. Abnormalities in the development of the SAN can result in irregular heart rates (arrhythmias). Although several of the critical genes important for SAN formation have been identified, our understanding of the transcriptional network controlling SAN development remains at a relatively early stage. The homeodomain transcription factor Shox2 plays an essential early role in the specification and patterning of the SAN. Here, we compared gene expression levels in the right atria of wildtype and Shox2-/- hearts using microarray experiments to identify Shox2 target genes. Right atria of E11.5 mouse embryos were dissected and genotyped for RNA extraction. RNA from 6 embryos and 2 independent pregnancies was pooled per genotype (Wildtype and Shox2 Knockout) and compared.
Experiment type
transcription profiling by array 
Contacts
Citation
Islet1 is a direct transcriptional target of the homeodomain transcription factor Shox2 and rescues the Shox2-mediated bradycardia. Hoffmann S, Berger IM, Glaser A, Bacon C, Li L, Gretz N, Steinbeisser H, Rottbauer W, Just S, Rappold G. , Europe PMC 23455426
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-GEOD-39924.idf.txt
Sample and data relationshipE-GEOD-39924.sdrf.txt
Raw data (1)E-GEOD-39924.raw.1.zip
Processed data (1)E-GEOD-39924.processed.1.zip
Array designA-GEOD-13730.adf.txt
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