E-GEOD-38879 - Transcription profiling by RNA-seq of Arabidopsis rve8-1 mutants with dexamethasone-induced expression of RVE8

Status
Released on 15 April 2013, last updated on 15 May 2014
Organism
Arabidopsis thaliana
Samples (12)
Protocols (4)
Description
The goal of this study is to identify the targets of RVE8, a MYB-like transcription factor involved in the circadian clock in Arabidopsis. Analysis of 7 days old rve8-1 RVE8::RVE8:GR and rve8-1 seedlings treated with dexamethasone or mock identified genes responsive to RVE8 induction.The RVE8 up-regulated genes are enriched for evening-phased genes while the down-regulated genes are enriched for a morning phase. This study reveals that RVE8 is a master regulator of circadian gene expression in Arabidopsis. Transgenic line rve8-1 RVE8::RVE8:GR and rve8-1 treated with DEX or mock with three biological replicates each, 12 samples in total.
Experiment type
RNA-seq of coding RNA 
Contacts
Citation
MINSEQE
Exp. designProtocolsFactorsProcessedSeq. reads
Files
Investigation descriptionE-GEOD-38879.idf.txt
Sample and data relationshipE-GEOD-38879.sdrf.txt
Links