E-GEOD-36955 - Yeast genomic expression patterns in response to zymolyase treatment

Status
Released on 21 March 2013, last updated on 2 June 2014
Organism
Saccharomyces cerevisiae
Samples (6)
Array (1)
Protocols (8)
Description
The evaluation of zymolyase treatment using yeast gene expression comparison analysis. The yeast BY4743 strain was used for this study. Yeast cells were treated with Zymolyase (final conc. 300 U/ml), and incubated at 37 degree for ten minutes. Digestion process was not provided for control sample. Total RNA was isolated with commercial kit (FastRNA Pro Red kit, Q-Biogene), and amplified RNA (aRNA) was synthesized with 3'IVT Express kit (Affymetrix). All samples were hybridized with Gene Chip (Yeast Genome 2.0 Array, Affymetrix), then each array chip was scanned by GeneChip Sanner 3000 (Affymetrix). Yeast were treated with zymolyase or left untreated. The only difference in conditions between the treated and untreated samples was the enzymatic digestion process. The conditioned samples were normalized with three replicates.
Experiment type
transcription profiling by array 
Contacts
Tadahiro Suzuki, Yumiko Iwahashi
Citation
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-GEOD-36955.idf.txt
Sample and data relationshipE-GEOD-36955.sdrf.txt
Raw data (1)E-GEOD-36955.raw.1.zip
Processed data (1)E-GEOD-36955.processed.1.zip
Array designA-AFFY-47.adf.txt
Links