E-GEOD-22159 - Transcription profiling by array of Arabidopsis chr11-1 chr17-1 mutants

Status
Released on 23 June 2010, last updated on 5 May 2015
Organism
Arabidopsis thaliana
Samples (6)
Array (1)
Protocols (8)
Description
Chromatin remodeling factors of the Imitation Switch (ISWI) family play important roles in epigenetic regulations of gene expression in yeast and animals, whereas their function in plants remains elusive. Here we report characterization of the Arabidopsis ISWI genes CHR11 and CHR17. Double mutant chr11 chr17 displayed a dramatically reduced plant size with early flowering. In addition, epidermis of the double mutant leaves showed cell characteristics seen only in floral organs. These phenotypes resemble, at least partially, those of the Polycomb mutants curly leaf (clf) and like heterochromatin protein1 (lhp1). Microarray analysis revealed that a number of targets of the Polycomb pathway were derepressed in chr11 chr17 leaves. Furthermore, triple mutants combining chr11 chr17 with clf-29 or lhp1-6 both greatly enhanced clf-29 and lhp1-6 phenotypes, respectively. All these results strongly suggest that the ISWI family genes in Arabidopsis may function in gene silencing via the Polycomb pathway Leaves from 15-day-old seedlings of wild-type Col-0 and chr11-1 chr17-1 were used for RNA preparation.In the experiment data,A refers to Col-0, and B refers to chr11-1 chr17-1.
Experiment types
transcription profiling by array, genetic modification design
Contacts
Citation
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-22159.idf.txt
Sample and data relationshipE-GEOD-22159.sdrf.txt
Raw data (1)E-GEOD-22159.raw.1.zip
Processed data (1)E-GEOD-22159.processed.1.zip
Array designA-AFFY-2.adf.txt
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