E-GEOD-19266 - Transcription profiling by array of Arabidopsis expressing DUO1 as a result of induction with estradiol

Status
Released on 9 December 2009, last updated on 30 April 2015
Organism
Arabidopsis thaliana
Samples (18)
Array (1)
Protocols (7)
Description
The experiment is designed to examine changes in gene expression upon ectopic expression of the germ line transcription factor DUO1 in Arabidopsis. Plants were transformed with the vector pMDC7DUO1, allowing induction of DUO1 by treatment with estradiol. T2 seedlings were selected on agar plates containing hygromycin for 12 days before seedlings were transferred to plates containing either 2 µM 17beta-estradiol (induced), or control plates containing DMSO (non-induced). Plants were grown for 6, 12 or 24 hours before harvesting. RNA was extracted using the RNAeasy kit from Qiagen. Each sample consists of 20 seedlings combined and all treatments have been conducted in triplicate. 18 samples were used in this experiment.
Experiment types
transcription profiling by array, compound treatment design, time series design
Contacts
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-19266.idf.txt
Sample and data relationshipE-GEOD-19266.sdrf.txt
Raw data (1)E-GEOD-19266.raw.1.zip
Processed data (1)E-GEOD-19266.processed.1.zip
Array designA-AFFY-2.adf.txt
Links