E-GEOD-18031 - Comparison of murine colonic mucosal DNA from postnatal day 90 (P90) to postnatal day 30 (P30) by MSAM

Status
Submitted on 8 September 2009, released on 22 May 2010, last updated on 2 May 2014
Organism
Mus musculus
Samples (4)
Array (1)
Protocols (8)
Description
DNA methylation profiling of colonic mucosal DNA between P90 and P30 mice. 0.5ug of DNA was serially digested with SmaI and XmaI followed by an adaptor ligation and adaptor mediated PCR amplification Two independent P90 to P30 comparisons were performed as follows. Samples were labelled with Cy3 (P30) and Cy5 (P90) and two independent P90 to P30 comparisons were done on a 2x105k methylation specific amplification microarray (MSAM) containing 90,535 probes, covering 77% of the 31,019 SmaI intervals between 200 bp and 2 kb in the mouse genome (average 3.8 probes per interval)
Experiment type
methylation profiling by array 
Contacts
Richard Kellermayer, Lanlan Shen
Citation
Epigenetic maturation in colonic mucosa continues beyond infancy in mice. Kellermayer R, Balasa A, Zhang W, Lee S, Mirza S, Chakravarty A, Szigeti R, Laritsky E, Tatevian N, Smith CW, Shen L, Waterland RA.
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-GEOD-18031.idf.txt
Sample and data relationshipE-GEOD-18031.sdrf.txt
Raw data (1)E-GEOD-18031.raw.1.zip
Processed data (1)E-GEOD-18031.processed.1.zip
Array designA-GEOD-9158.adf.txt
R ExpressionSetE-GEOD-18031.eSet.r
Links