E-GEOD-17549 - Transcription profiling by array of human fibroblasts and monocytes from patients with choroideremia

Status
Released on 21 February 2010, last updated on 1 May 2014
Organism
Homo sapiens
Samples (15)
Array (1)
Protocols (9)
Description
Choroideremia (CHM) is a progressive X-linked retinopathy caused by mutations in the CHM gene, which encodes Rab escort protein-1 (REP-1), an escort protein involved in the prenylation of Rabs. Under-prenylation of certain Rabs, as a result of loss of function mutations in REP-1, could affect vesicular trafficking, exocytosis and secretion. To evaluate this hypothesis, intracellular vesicle transport, lysosomal acidification and rates of proteolytic degradation were studied in monocytes (CD14+ fraction) and primary skin fibroblasts from the nine age-matched controls and thirteen CHM patients carrying 10 different loss-of-function mutations. expression data were collected from 6 CHM patients' monocytes and 4 CHM primary fibroblasts cultures, monocytes or FB from 5 normal age-matched subjects were used as a control
Experiment type
transcription profiling by array 
Contacts
Jennifer Barb <barbj@mail.nih.gov>, Ian M MacDonald, Natalia V Strunnikova, Peter Munson
Citation
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-GEOD-17549.idf.txt
Sample and data relationshipE-GEOD-17549.sdrf.txt
Raw data (1)E-GEOD-17549.raw.1.zip
Processed data (1)E-GEOD-17549.processed.1.zip
Array designA-AFFY-44.adf.txt
R ExpressionSetE-GEOD-17549.eSet.r
Links