E-GEOD-1323 - Transcription profiling of human colorectal cancer cell lines derived from a primary tumor and a corresponding lymph node metastasis from the same individual

Status
Submitted on 20 April 2004, released on 4 August 2007, last updated on 27 March 2012
Organism
Homo sapiens
Samples (6)
Array (1)
Protocols (2)
Description
SW480 and SW620 are colon cancer cells lines derived from a primary tumor and a corresponding metastasis from the same individual. The numbers indicate the three independent replicate RNA samples processed. Three different software packages were used in parallel for signal calculation: Affymetrix microarray suite 5.0, DNA-Chip analyzer, and Robust multi-array analyses.
Experiment types
transcription profiling by array, co-expression, disease state
Contact
Citation
Global alterations in mRNA polysomal recruitment in a cell model of colorectal cancer progression to metastasis. Alessandro Provenzani, Raffaele Fronza, Fabrizio Loreni, Alessia Pascale, Marialaura Amadio, Alessandro Quattrone. Carcinogenesis 27(7):1323-33 (2006)
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-GEOD-1323.idf.txt
Sample and data relationshipE-GEOD-1323.sdrf.txt
Raw data (1)E-GEOD-1323.raw.1.zip
Processed data (1)E-GEOD-1323.processed.1.zip
Array designA-AFFY-33.adf.txt
R ExpressionSetE-GEOD-1323.eSet.r
Links