E-GEOD-13222 - Transcription profiling of mouse AKR/J x FVB/NJ F1 versus DBA/2J x FVB F1 blood

Status
Submitted on 16 October 2008, released on 13 January 2009, last updated on 10 June 2011
Organism
Mus musculus
Samples (5)
Array (1)
Protocols (4)
Description
F1 hybrids from (AKR/J x FVB/NJ) and (DBA/2J x FVB/NJ) outcrosses display a 20-fold difference in mammary tumor metastatic capacity, due to differences in inherited polymorphisms. Expression studies were performed to determine whether polymorphism-driven gene expression signatures predictive of outcome could be generated from normal tissues Experiment Overall Design: Whole blood from adult F1 animals from (AKR/J x FVB/NJ) and (DBA/2J x FVB/NJ) outcrosses was collected and arrayed on Affymetrics chip to identify basal differences in gene expression between the different genotypes
Experiment types
transcription profiling by array, unknown experiment type
Contact
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-GEOD-13222.idf.txt
Sample and data relationshipE-GEOD-13222.sdrf.txt
Raw data (1)E-GEOD-13222.raw.1.zip
Processed data (1)E-GEOD-13222.processed.1.zip
Array designA-AFFY-45.adf.txt
R ExpressionSetE-GEOD-13222.eSet.r
Links