E-GEOD-13075 - SIRT1 and H1AcK26 promoter-association in mouse ES cells changes upon oxidative stress

Status
Submitted on 6 October 2008, released on 15 May 2010, last updated on 4 May 2014
Organism
Mus musculus
Samples (10)
Array (1)
Protocols (9)
Description
Association of the (histone) deacetylase SIRT1 with promoters was assessed to determine putative SIRT1-regulated genes. Based on the observation that the SIRT1 yeast ortholog Sir2 redistributes across the yeast genome in repsonse to genotoxic stress and double strand breaks (DSBs), we investigated the impact of oxidative stress on the chromatin binding pattern of SIRT1. Oxidative stress causes a major change in SIRT1 binding that is accompanied by an inverse H1K26 acetylation pattern. H1K26 was shown to be a direct target for deacetylation by SIRT1. Keywords: ChIP-chip, stress response ES cells were left untreated or treated with 2 mM H2O2 for 1 hour. Both samples were subjected to ChIP against SIRT1, H1AcK26 or rabbit Ig (one IP per treatment and Ab). Input DNA was labeled with Cy3, IP DNA with Cy5, enrichment over input is reported as 2log.
Experiment type
ChIP-chip by array 
Contacts
Citation
SIRT1 redistribution on chromatin promotes genomic stability but alters gene expression during aging. Oberdoerffer P, Michan S, McVay M, Mostoslavsky R, Vann J, Park SK, Hartlerode A, Stegmuller J, Hafner A, Loerch P, Wright SM, Mills KD, Bonni A, Yankner BA, Scully R, Prolla TA, Alt FW, Sinclair DA.
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-GEOD-13075.idf.txt
Sample and data relationshipE-GEOD-13075.sdrf.txt
Raw data (1)E-GEOD-13075.raw.1.zip
Processed data (1)E-GEOD-13075.processed.1.zip
Array designA-GEOD-7496.adf.txt
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