E-GEOD-11921 - Microarray-based comparative genomic profiling of reference strains of Actinobacillus pleuropneumoniae

Status
Submitted on 26 June 2008, released on 2 February 2009, last updated on 1 May 2014
Organism
Actinobacillus pleuropneumoniae
Samples (66)
Array (1)
Protocols (7)
Description
Microarray-based comparative genomic hybridizations were used to estimate whole genomic diversity of representative Actinobacillus pleuropneumoniae strains. Our goal was to identify conserved genes, especially those predicted to encode outer membrane proteins and lipoproteins because of their potential for the development of more effective vaccines. Keywords: Comparative Genomic Hybridisation Microarray data for 15 known serotypes of Actinobacillus pleuropneumoniae (at least 2 replicates per serotype).
Experiment type
comparative genomic hybridization by array 
Contacts
John H Nash <John.Nash@gmail.com>, Anne Bouevitch, Wendy A Findlay
Citation
Microarray-based comparative genomic profiling of reference strains and selected Canadian field isolates of Actinobacillus pleuropneumoniae. Gouré J, Findlay WA, Deslandes V, Bouevitch A, Foote SJ, MacInnes JI, Coulton JW, Nash JH, Jacques M.
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-11921.idf.txt
Sample and data relationshipE-GEOD-11921.sdrf.txt
Raw data (1)E-GEOD-11921.raw.1.zip
Processed data (1)E-GEOD-11921.processed.1.zip
Experiment designE-GEOD-11921.biosamples.png, E-GEOD-11921.biosamples.svg
Array designA-GEOD-6658.adf.txt
Links