E-GEOD-11172 - Genome-wide chromatin state maps of ES cells, ES-derived neural progenitor cells and brain tissue

Status
Released on 5 July 2008, last updated on 2 May 2014
Organism
Mus musculus
Samples (7)
Protocols (3)
Description
Genome-wide chromatin state maps of murine embryonic stem (ES) cells, ES-derived neural progenitor cells and whole brain tissue. The data were generated to examine the correlation between histone and DNA methylation during lineage-commitment. Keywords: High-throughput ChIP-sequencing, Illumina, cell type comparison H3K4me3, H3K4me2 and/or H3K4me1 ChIP-Seq in singlicate from mouse embryonic stem (ES) cells, ES-derived neural progenitor cells and whole brain tissue suspensions Raw sequence data files for this study are available for download from the SRA FTP site at ftp://ftp.ncbi.nlm.nih.gov/sra/Studies/SRP000/SRP000230
Experiment type
ChIP-seq 
Contacts
Alexander Meissner, Andreas Gnirke, Eric S Lander, Rudolf Jaenisch, Tarjei S Mikkelsen, Xiaolan Zhang
Citation
Genome-scale DNA methylation maps of pluripotent and differentiated cells. Meissner A, Mikkelsen TS, Gu H, Wernig M, Hanna J, Sivachenko A, Zhang X, Bernstein BE, Nusbaum C, Jaffe DB, Gnirke A, Jaenisch R, Lander ES. , Europe PMC 18600261
MINSEQE
Exp. designProtocolsFactorsProcessedSeq. reads
Files
Investigation descriptionE-GEOD-11172.idf.txt
Sample and data relationshipE-GEOD-11172.sdrf.txt
Processed data (13)Click to browse processed data
Links