E-GEOD-10051 - A compendium of antibiotic-induced transcription profiles reveals broad regulation of P. multocida virulence genes

Status
Submitted on 2 January 2008, released on 1 June 2008, last updated on 27 March 2012
Organism
Pasteurella multocida
Samples (72)
Array (1)
Protocols (8)
Description
Treatment of bacteria with antibiotics at or close to the inhibitory concentration leads to specific transcriptional responses often affecting target genes and targets pathways. A dataset of transcriptional profiles (compendium) induced by antibiotics with known mode-of-action (MoA) can be used to gain information on the putative MoA of novel substances with unknown MoAs. We used a Pasteurella multocida microarray to generate a compendium of transcriptional profiles and to obtain information on the putative MoA of a novel antibiotic compound. We also show a strong impact of the bacteriostatic antibiotics on P. multocida virulence gene transcription. Keywords: antibiotica treatment, time course Midlog-grown cultures of P. multocida were treated for 10 or 30 min with 8 different antibiotics and one novel compound (thiazin) at minimal inhibitory concentrations (MICs) and were harvested. Control bacteria were not-treated and harvested at approximately the same optical density an OD578 of ~ 0.5. Total RNA was extracted from these samples and labelled with biotin. P. multocida whole genome transcriptional profiling was performed by hybridization on the custom-made Affymetrix microarray according to the manufacturer’s instructions. The experiments were done in triplicates.
Experiment type
transcription profiling by array 
Contacts
Elena Melnikow <Elena.Melnikow@intervet.com>, Caroline Schoenfeld, Heinz J Ullrich, Michael Duszenko, Nikolas Gunkel, Paul M Selzer, Ralf Warrass, Volker Spehr
Citation
A compendium of antibiotic-induced transcription profiles reveals broad regulation of Pasteurella multocida virulence genes. Melnikow E, Schoenfeld C, Spehr V, Warrass R, Gunkel N, Duszenko M, Selzer PM, Ullrich HJ.
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-10051.idf.txt
Sample and data relationshipE-GEOD-10051.sdrf.txt
Raw data (1)E-GEOD-10051.raw.1.zip
Processed data (1)E-GEOD-10051.processed.1.zip
Experiment designE-GEOD-10051.biosamples.png, E-GEOD-10051.biosamples.svg
Array designA-GEOD-6291.adf.txt
R ExpressionSetE-GEOD-10051.eSet.r
Links