E-GEOD-10001 - Gene expression profiling in NCoR deficient mouse livers

Status
Submitted on 21 December 2007, released on 3 December 2008, last updated on 27 March 2012
Organism
Mus musculus
Samples (12)
Array (1)
Protocols (6)
Description
The thyroid hormone receptor (TR) has been proposed to regulate target genes in the absence of triiodothyronine (T3), through the recruitment of the corepressors, NCoR and SMRT. NCoR and SMRT may thus play a key role in both hypothyroidism and resistance to thyroid hormone, though this has never been tested in vivo. To accomplish this we developed mice that express in the liver a NCoR protein (L-NCoR∆ID) that cannot interact with the TR. L-NCoR∆ID mice develop normally, however when made hypothyroid the repression of many positively regulated T3-target genes is abrogated, demonstrating that NCoR plays a specific and sufficient role in repression by the unliganded TR. Remarkably, in the euthyroid state, expression of many T3-targets are also upregulated in L-NCoR∆ID mice, demonstrating that NCoR also determines the magnitude of the response to T3 in euthyroid animals. While positive T3 targets were upregulated in L-NCoR∆ID mice in the hypo and euthyroid state there was less effect seen on negatively regulated T3 target genes. Thus, NCoR is a specific regulator of T3-action in vivo and mediates the activity of the unliganded TR. Furthermore, NCoR may play a key role in determining the differences in individual responses to similar levels of circulating T3. Keywords: NCoR, thyroid hormone signaling, mouse liver, DNA Microarray To better assess the role of NCoR in positive and negative regulation we performed micorarray analysis of gene expression in the livers of euthyroid and hypothyroid control and L-NCoR∆ID mice.
Experiment type
transcription profiling by array 
Contacts
Martin Bilban <Martin.Bilban@meduniwien.ac.at>, Inna Astapova, Tony H Hollenberg
Citation
The nuclear corepressor, NCoR, regulates thyroid hormone action in vivo. Astapova I, Lee LJ, Morales C, Tauber S, Bilban M, Hollenberg AN.
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-10001.idf.txt
Sample and data relationshipE-GEOD-10001.sdrf.txt
Raw data (1)E-GEOD-10001.raw.1.zip
Processed data (1)E-GEOD-10001.processed.1.zip
Experiment designE-GEOD-10001.biosamples.png, E-GEOD-10001.biosamples.svg
Array designA-AFFY-130.adf.txt
R ExpressionSetE-GEOD-10001.eSet.r
Links