E-ERAD-136 - RNA-seq of host mice and rodent malaria parasites over the course of infection

Status
Released on 13 May 2013, last updated on 18 May 2016
Organism
Mus musculus, Plasmodium chabaudi
Samples (45)
Protocols (2)
Description
We have shown previously (Reid & Berriman, NAR, 2012) that by simultaneously examining host and parasite gene expression over the course of infection we can determine pairs of genes involved in host-parasite interaction. Here we are producing a high quality dataset which will specifically allow us to exploit this finding to identify genes involved in malaria host-parasite interaction. This has been done in collaboration with Jean Langhorne at NIMR. This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/
Experiment types
RNA-seq of coding RNA, time series design
Contact
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-ERAD-136.idf.txt
Sample and data relationshipE-ERAD-136.sdrf.txt
Links