E-ERAD-136 - RNA-seq of host mice and rodent malaria parasites over the course of infection

Status
Released on 13 May 2013, last updated on 1 May 2014
Organism
Mus musculus, Plasmodium chabaudi
Samples (45)
Protocols (2)
Description
We have shown previously (Reid & Berriman, NAR, 2012) that by simultaneously examining host and parasite gene expression over the course of infection we can determine pairs of genes involved in host-parasite interaction. Here we are producing a high quality dataset which will specifically allow us to exploit this finding to identify genes involved in malaria host-parasite interaction. This has been done in collaboration with Jean Langhorne at NIMR. This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/
Experiment types
RNA-seq of coding RNA, time series design
Contact
MINSEQE
Exp. designProtocolsFactorsProcessedSeq. reads
Files
Investigation descriptionE-ERAD-136.idf.txt
Sample and data relationshipE-ERAD-136.sdrf.txt
Links