E-CBIL-48 - Transcription profiling of mouse Ngn3 expressing cells and endocrine pancreatic cells from wild type and Ngn3 mutant animals at day 15 of embryonic development

Status
Submitted on 30 November 2009, released on 3 December 2009, last updated on 10 June 2011
Organism
Mus musculus
Samples (14)
Array (1)
Protocols (8)
Description
The basic helix-loop-helix transcription factor Neurogenin3 (Ngn3/Neurog3) is expressed in endocrine progenitor cells in the embryonic mouse pancreas. Ngn3 controls endocrine cell fate decisions. Ngn3 deficient mice do not develop any pancreatic endocrine cells, including insulin producing beta cells, and die postnatally from diabetes. Therefore, the characterization of gene expression in Ngn3-expressing cells and their progeny is of particular interest for the development of novel strategies for cell replacement therapies in type-1 diabetes. Here we describe two studies. In the first study (8 assays) we used mice where the EYFP (Enhanced Yellow fluorescent Protein) is expressed under the control of Ngn3 regulatory elements (knock add on strategy). EYFP-positive, Ngn3-expressing cells, were FACS sorted from embryonic pancreas at day 15.5 (E15.5), as well as EYFP-negative cells. In the second study (6 assays) we compared wild-type and Ngn3 mutant pancreas at E15.5. All samples were hybridized to Affymetrix GeneChip Mouse Genome 430.2.0 array.
Experiment types
transcription profiling by array, cell type comparison, genetic modification, organism part comparison
Contact
Citation
Rfx6 as an Ngn3-dependent winged helix transcription factor required for pancreatic islet cell development. Soyer J., Flasse L., Raffelsberger W., Beucher A., Orvain C., Peers B., Ravassard P., Vermot J., Voz M.L., Mellitzer G., Gradwohl G. Development  (2009)
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-CBIL-48.idf.txt
Sample and data relationshipE-CBIL-48.sdrf.txt
Raw data (1)E-CBIL-48.raw.1.zip
Processed data (1)E-CBIL-48.processed.1.zip
Experiment designE-CBIL-48.biosamples.png, E-CBIL-48.biosamples.svg
Array designA-AFFY-36.adf.txt
R ExpressionSetE-CBIL-48.eSet.r
Links