E-CBIL-38 - Chromatin immunoprecipitation and transcription of mouse liver in the presence or absence of exogenous glucocorticoid to identify direct targets of the glucocorticoid receptor

Status
Submitted on 27 August 2007, released on 14 September 2007, last updated on 2 June 2014
Organism
Mus musculus
Samples (11)
Arrays (2)
Protocols (13)
Description
The purpose of this study was to identify direct targets of the glucocorticoid receptor (GR) using an orthogonal analysis. An expression study of mouse livers in the presence or absence of exogenous glucocorticoid complemented a genome-wide location analysis on chromatin from the same livers. These were hybridized to the BCBC Mouse PancChip 5.0 and the Mouse PromoterChip BCBC-3.0 respectively.
Experiment types
ChIP-chip by array, binding site identification, compound treatment, reference
Contacts
Citation
Glucocorticoid receptor-dependent gene regulatory networks. Phuc Le Phillip, Friedman Joshua R, Schug Jonathan, Brestelli John E, Parker J Brandon, Bochkis Irina M, Kaestner Klaus H. PLoS Genet 1(2):e16 (2005)
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-CBIL-38.idf.txt
Sample and data relationshipE-CBIL-38.sdrf.txt
Raw data (1)E-CBIL-38.raw.1.zip
Experiment designE-CBIL-38.biosamples.png, E-CBIL-38.biosamples.svg
Array designsA-CBIL-14.adf.txt, A-CBIL-2.adf.txt
Links