E-BASE-11 - Transcription profiling of cod to determine whether gene expression profiles would reflect environmental levels and composition of pollutants in two saltwater recipients, Sarfjorden and Store Lungegardsvann

Status
Submitted on 11 September 2008, released on 1 June 2009, last updated on 1 May 2014
Organism
Gadus morhua
Samples (39)
Array (1)
Protocols (6)
Description
In the present study we aimed to develop a custom made cDNA microarray, the CodStress array, for Atlantic cod to be used as a diagnostic tool in environmental monitoring of polluted waters. We wanted to investigate if the gene expression profiles would reflect environmental levels and composition of pollutants in two saltwater recipients, S?rfjorden and Store Lungeg?rdsvann.
Experiment types
transcription profiling by array, compound treatment, reference
Contact
Citation
Gene expression profiling in Atlantic cod (Gadus morhua L.) from two contaminated sites using a custom made cDNA microarray. Kai K. Lie?, Anders Lanzen?, Harald Breilid?, P?l A. Olsvik?.
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-BASE-11.idf.txt
Sample and data relationshipE-BASE-11.sdrf.txt
Raw data (1)E-BASE-11.raw.1.zip
Experiment designE-BASE-11.biosamples.png, E-BASE-11.biosamples.svg
Array designA-BASE-8.adf.txt
R ExpressionSetE-BASE-11.eSet.r
Links