Source Name Characteristics [BioSourceType] Characteristics [OrganismPart] Characteristics [Ecotype] Characteristics [Organism] Term Source REF Term Accession Number Characteristics [NASC:Growth Stage] Characteristics [NASC:StockCode] Characteristics [DiseaseState] Characteristics [GeneticModification] Characteristics [Genotype] Protocol REF Parameter Value [Stratification] Parameter Value [Water] Parameter Value [location] Parameter Value [Atmosphere] Parameter Value [Lighting] Parameter Value [Temperature] Parameter Value [Humidity] Parameter Value [Nutrients] Parameter Value [Medium] Sample Name Protocol REF Extract Name Material Type Protocol REF Labeled Extract Name Label Material Type Protocol REF Hybridization Name Array Design REF Protocol REF Factor Value [Heterodera schachtii (nematode) infection] Scan Name Array Data File Comment [ArrayExpress FTP file] Protocol REF Derived Array Data Matrix File Comment [Derived ArrayExpress FTP file] Urwin_A-2-Urwin-Inf_SRC frozen_sample lateral roots Columbia-0 Arabidopsis thaliana EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_3702 6.1 N1093 Heterodera schachtii nematode infection none NASCSampleTreatmentProt:207 Urwin_A-2-Urwin-Inf_SRC NASCExtractProtocol:1 123890602 total_RNA NASCLabelProtocol:1 Urwin_A-2-Urwin-Inf_EXT Biotin total_RNA Affymetrix:Protocol:Hybridization-EukGE-WS2v4 PU001_ATH1_A2-Urwin-Inf A-AFFY-2 Affymetrix:Protocol:Percentile disease_state PU001_ATH1_A2-Urwin-Inf E-NASC-3-raw-data-123890655.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/NASC/E-NASC-3/E-NASC-3.raw.1.zip Affymetrix:Protocol:ExpressionStat E-NASC-3-processed-data-1341889237.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/NASC/E-NASC-3/E-NASC-3.processed.1.zip Urwin_A-1-Urwin-Con_SRC frozen_sample lateral roots Columbia-0 Arabidopsis thaliana EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_3702 6.1 N1093 wild_type NASCGrowProt:206 on moist filter paper at 4 C for 3 days n/a Sanyo MLR3500 growth cabinet Normal 16:8 light:dark 20.5 Ambient 0.5 MS10 media 0.5 MS10 media 0.2 % phytagel Urwin_A-1-Urwin-Con_SRC NASCExtractProtocol:1 123890585 total_RNA NASCLabelProtocol:1 Urwin_A-1-Urwin-Con_EXT Biotin total_RNA Affymetrix:Protocol:Hybridization-EukGE-WS2v4 PU001_ATH1_A1-Urwin-Con A-AFFY-2 Affymetrix:Protocol:Percentile disease_state PU001_ATH1_A1-Urwin-Con E-NASC-3-raw-data-123890626.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/NASC/E-NASC-3/E-NASC-3.raw.1.zip Affymetrix:Protocol:ExpressionStat E-NASC-3-processed-data-1341889237.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/NASC/E-NASC-3/E-NASC-3.processed.1.zip