Source Name	Characteristics [NASC:Growth Stage]	Characteristics [OrganismPart]	Characteristics [StrainOrLine]	Characteristics [Organism]	Term Source REF	Term Accession Number	Characteristics [NASC:StockCode]	Characteristics [BioSourceType]	Characteristics [GeneticModification]	Protocol REF	Parameter Value [Humidity]	Parameter Value [Temperature]	Parameter Value [location]	Parameter Value [Atmosphere]	Parameter Value [Stratification]	Parameter Value [Nutrients]	Parameter Value [Water]	Parameter Value [Lighting]	Parameter Value [Medium]	Sample Name	Protocol REF	Extract Name	Material Type	Protocol REF	Labeled Extract Name	Label	Material Type	Protocol REF	Hybridization Name	Array Design REF	Protocol REF	Factor Value [growth condition factor ]	Term Source REF	Term Accession Number	Scan Name	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Derived Array Data Matrix File	Comment [Derived ArrayExpress FTP file]
MILL-AIR-REP3	3.9	petiole	col	Arabidopsis thaliana	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_3702	N1093	frozen_sample	none	NASCGrowProt:121	70	20	Growth Room	Normal	4 days 4 degrees	osmocote mini	1 x per day 	9 g light  15 h dark	compost+perlite	MILL-AIR-REP3	NASCExtractProtocol:3	124470523	total_RNA	NASCLabelProtocol:1	MILL-AIR-REP3	Biotin	total_RNA	Affymetrix:Protocol:Hybridization-EukGE-WS2v4	FM001_ATH1_A4-MILL-AIR-REP3	A-AFFY-2	Affymetrix:Protocol:Percentile	growth_condition	EFO	EFO_0000523	FM001_ATH1_A4-MILL-AIR-REP3	E-NASC-2-raw-data-124470764.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/NASC/E-NASC-2/E-NASC-2.raw.1.zip	Affymetrix:Protocol:ExpressionStat	E-NASC-2-processed-data-2506342248.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/NASC/E-NASC-2/E-NASC-2.processed.1.zip
MILL-LL-REP2	3.9	petiole	col	Arabidopsis thaliana	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_3702	N1093	frozen_sample	none	NASCGrowProt:408	70	20	Growth Room	Normal	4 days 4 degrees	osmocote mini	1 x per day 	9 g light  15 h dark	compost+perlite	MILL-LL-REP2	NASCExtractProtocol:3	124470563	total_RNA	NASCLabelProtocol:1	MILL-LL-REP2	Biotin	total_RNA	Affymetrix:Protocol:Hybridization-EukGE-WS2v4	FM001_ATH1_A3-MILL-LL-REP2	A-AFFY-2	Affymetrix:Protocol:Percentile	  	  	  	FM001_ATH1_A3-MILL-LL-REP2	E-NASC-2-raw-data-124470708.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/NASC/E-NASC-2/E-NASC-2.raw.1.zip	Affymetrix:Protocol:ExpressionStat	E-NASC-2-processed-data-2506342248.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/NASC/E-NASC-2/E-NASC-2.processed.1.zip
MILL-AIR-REP2	3.9	petiole	col	Arabidopsis thaliana	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_3702	N1093	frozen_sample	none	NASCGrowProt:120	70	20	Growth Room	Normal	4 days 4 degrees	osmocote mini	1 x per day 	9 g light  15 h dark	compost+perlite	MILL-AIR-REP2	NASCExtractProtocol:3	124470515	total_RNA	NASCLabelProtocol:1	MILL-AIR-REP2	Biotin	total_RNA	Affymetrix:Protocol:Hybridization-EukGE-WS2v4	FM001_ATH1_A1-MILL-AIR-REP2	A-AFFY-2	Affymetrix:Protocol:Percentile	  	  	  	FM001_ATH1_A1-MILL-AIR-REP2	E-NASC-2-raw-data-124470596.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/NASC/E-NASC-2/E-NASC-2.raw.1.zip	Affymetrix:Protocol:ExpressionStat	E-NASC-2-processed-data-2506342248.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/NASC/E-NASC-2/E-NASC-2.processed.1.zip
MILL-ETH-REP3	3.9	petiole	col	Arabidopsis thaliana	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_3702	N1093	frozen_sample	none	NASCGrowProt:406	70	20	Growth Room	Normal	4 days 4 degrees	osmocote mini	1 x per day 	9 g light  15 h dark	compost+perlite	MILL-ETH-REP3	NASCExtractProtocol:3	124470547	total_RNA	NASCLabelProtocol:1	MILL-ETH-REP3	Biotin	total_RNA	Affymetrix:Protocol:Hybridization-EukGE-WS2v4	FM001_ATH1_A5-MILL-ETH-REP3	A-AFFY-2	Affymetrix:Protocol:Percentile	growth_condition	EFO	EFO_0000523	FM001_ATH1_A5-MILL-ETH-REP3	E-NASC-2-raw-data-124470782.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/NASC/E-NASC-2/E-NASC-2.raw.1.zip	Affymetrix:Protocol:ExpressionStat	E-NASC-2-processed-data-2506342248.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/NASC/E-NASC-2/E-NASC-2.processed.1.zip
MILL-ETH-REP2	3.9	petiole	col	Arabidopsis thaliana	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_3702	N1093	frozen_sample	none	NASCSampleTreatmentProt:123	  	  	  	  	  	  	  	  	  	MILL-ETH-REP2	NASCExtractProtocol:3	124470539	total_RNA	NASCLabelProtocol:1	MILL-ETH-REP2	Biotin	total_RNA	Affymetrix:Protocol:Hybridization-EukGE-WS2v4	FM001_ATH1_A2-MILL-ETH-REP2	A-AFFY-2	Affymetrix:Protocol:Percentile	  	  	  	FM001_ATH1_A2-MILL-ETH-REP2	E-NASC-2-raw-data-124470652.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/NASC/E-NASC-2/E-NASC-2.raw.1.zip	Affymetrix:Protocol:ExpressionStat	E-NASC-2-processed-data-2506342248.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/NASC/E-NASC-2/E-NASC-2.processed.1.zip
MILL-ETH-REP1	3.9	petiole	col	Arabidopsis thaliana	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_3702	N1093	frozen_sample	none	NASCSampleTreatmentProt:122	  	  	  	  	  	  	  	  	  	MILL-ETH-REP1	NASCExtractProtocol:3	124470531	total_RNA	NASCLabelProtocol:1	MILL-ETH-REP1	Biotin	total_RNA	Affymetrix:Protocol:Hybridization-EukGE-WS2v4	FM001_ATH1_A2-MILL-ETH	A-AFFY-2	Affymetrix:Protocol:Percentile	  	  	  	FM001_ATH1_A2-MILL-ETH	E-NASC-2-raw-data-124470930.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/NASC/E-NASC-2/E-NASC-2.raw.1.zip	Affymetrix:Protocol:ExpressionStat	E-NASC-2-processed-data-2506342248.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/NASC/E-NASC-2/E-NASC-2.processed.1.zip
MILL-LL-REP1	3.9	petiole	col	Arabidopsis thaliana	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_3702	N1093	frozen_sample	none	NASCGrowProt:407	70	20	Growth Room	Normal	4 days 4 degrees	osmocote mini	1 x per day 	9 g light  15 h dark	compost+perlite	MILL-LL-REP1	NASCExtractProtocol:3	124470555	total_RNA	NASCLabelProtocol:1	MILL-LL-REP1	Biotin	total_RNA	Affymetrix:Protocol:Hybridization-EukGE-WS2v4	FM001_ATH1_A3-MILL-LL	A-AFFY-2	Affymetrix:Protocol:Percentile	  	  	  	FM001_ATH1_A3-MILL-LL	E-NASC-2-raw-data-124470986.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/NASC/E-NASC-2/E-NASC-2.raw.1.zip	Affymetrix:Protocol:ExpressionStat	E-NASC-2-processed-data-2506342248.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/NASC/E-NASC-2/E-NASC-2.processed.1.zip
MILL-LL-REP3	3.9	petiole	col	Arabidopsis thaliana	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_3702	N1093	frozen_sample	none	NASCGrowProt:409	70	20	Growth Room	Normal	4 days 4 degrees	osmocote mini	1 x per day 	9 g light  15 h dark	compost+perlite	MILL-LL-REP3	NASCExtractProtocol:3	124470571	total_RNA	NASCLabelProtocol:1	MILL-LL-REP3	Biotin	total_RNA	Affymetrix:Protocol:Hybridization-EukGE-WS2v4	FM001_ATH1_A6-MILL-LL-REP3	A-AFFY-2	Affymetrix:Protocol:Percentile	growth_condition	EFO	EFO_0000523	FM001_ATH1_A6-MILL-LL-REP3	E-NASC-2-raw-data-124470800.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/NASC/E-NASC-2/E-NASC-2.raw.1.zip	Affymetrix:Protocol:ExpressionStat	E-NASC-2-processed-data-2506342248.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/NASC/E-NASC-2/E-NASC-2.processed.1.zip
MILL-AIR-REP1	3.9	petiole	col	Arabidopsis thaliana	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_3702	N1093	frozen_sample	none	NASCGrowProt:119	70	20	Growth Room	Normal	4 days 4 degrees	osmocote mini	1 x per day 	9 g light  15 h dark	compost+perlite	MILL-AIR-REP1	NASCExtractProtocol:3	124470507	total_RNA	NASCLabelProtocol:1	MILL-AIR-REP1	Biotin	total_RNA	Affymetrix:Protocol:Hybridization-EukGE-WS2v4	FM001_ATH1_A1-MILL-AIR	A-AFFY-2	Affymetrix:Protocol:Percentile	  	  	  	FM001_ATH1_A1-MILL-AIR	E-NASC-2-raw-data-124470874.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/NASC/E-NASC-2/E-NASC-2.raw.1.zip	Affymetrix:Protocol:ExpressionStat	E-NASC-2-processed-data-2506342248.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/NASC/E-NASC-2/E-NASC-2.processed.1.zip