A-GEOD-11534 - [RaGene-1_1-st] Affymetrix Rat Gene 1.1 ST Array [transcript (gene) version]

Organism
Rattus norvegicus
Description
Array Manufacturer: Affymetrix, Distribution: commercial, Technology: in situ oligonucleotide, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at
RaGene-1_1-st-v1.na31.rn4.transcript.csv #%create_date=Fri Sep 17 11:36:51 2010 PDT #%chip_type=RaGene-1_1-st-v1 #%lib_set_name=RaGene-1_1-st #%lib_set_version=v1 #%genome-species=Rattus norvegicus #%genome-version=rn4 #%genome-version-ucsc=rn4 #%genome-version-ncbi=Rnor3.4 #%genome-version-create_date=2004-11-00 #%genome-lifted_from-species=Rattus norvegicus #%genome-lifted_from-version-ucsc=rn4 #%genome-lifted_from-version-ncbi=Rnor3.4 #%netaffx-annotation-date=2009-11-23 #%netaffx-annotation-netaffx-build=31

Comment[%create_date] = Fri Sep 17 11:36:51 2010 PDT

Comment[%chip_type] = RaGene-1_1-st-v1

Comment[%lib_set_name] = RaGene-1_1-st

Comment[%lib_set_version] = v1

Comment[%genome-species] = Rattus norvegicus

Comment[%genome-version] = rn4

Comment[%genome-version-ucsc] = rn4

Comment[%genome-version-ncbi] = Rnor3.4

Comment[%genome-version-create_date] = 2004-11-00

Comment[%genome-lifted_from-species] = Rattus norvegicus

Comment[%genome-lifted_from-version-ucsc] = rn4

Comment[%genome-lifted_from-version-ncbi] = Rnor3.4

Comment[%netaffx-annotation-date] = 2009-11-23

Comment[%netaffx-annotation-netaffx-build] = 31

Reporter Name = transcript_cluster_id LINK_PRE:

Reporter Database Entry [genbank] = GenBank and RefSeq Accessions from mrna_assignment column LINK_PRE:
DELIMIT:,

Comment[SPOT_ID] = genomic location of the transcript cluster in the version of the genome assembly used at annotation time. Coordinates are standard 1-based (length=stop-start+1).

Comment[seqname] = chromosome number

Comment[RANGE_GB] = NCBI RefSeq for chromosome of current build

Comment[RANGE_STRAND] = strand (+|-)

Comment[RANGE_START] = start (integer). Coordinates are standard 1-based (length=stop-start+1).

Comment[RANGE_STOP] = stop (integer). Coordinates are standard 1-based (length=stop-start+1).

Comment[total_probes] = Total number of probes contained by this transcript cluster.

Comment[gene_assignment] = Gene information for each assigned mRNA for mRNAs that corresponds to known genes (multipart).

Comment[mrna_assignment] = Description of the public mRNAs that should be detected by the sets within this transcript cluster based on sequence alignment (multipart).

Comment[category] = Array design category of the transcript cluster
Provider
Affymetrix Inc.(geo@ncbi.nlm.nih.gov, support@affymetrix.com)
Links
All experiments done using A-GEOD-11534: (E-GEOD-35976, E-GEOD-40170, E-GEOD-45953, E-GEOD-46988, E-GEOD-49849, E-GEOD-49851)
Files